Courses:
Fall 2011
Biology 001 Environment Preservation & Improvement.
Biology 1 is a readings-based seminar that treats current ecological issues as they
relate to preserving and improving the environment. This year's topics are
drawn from readings in Frontiers in Ecology and the Environment, a new
journal that provides timely and exciting translations of the best environmental
science for use by scientists, the science media, the corporate world and political
decision makers. Examples of topics include mapping urban growth from space, modern
sustainable agriculture, invasive species, climate and conservation biology of
whales, and wildlife medicine. This course does not count towards the biology
major. Dr. Ellmore Block 6: Tuesday 1:30 – 4:00pm Barnum 114. Call #03885.
Biology 004 Gross Anatomy.
(Cross listed as Occupational Therapy 102). Call Boston School of Occupational
Therapy (617-627-5720) for information about this course.
Biology 007 Environmental Biology.
(Cross listed as Environmental Studies 007)
An examination of major natural and created ecosystems and human influences on
them. Biological bases for species distributions, human population size, and
conservation. Ecological bases for sound land use and pollution abatement
Dr. Reed Block C: T-W-F, 9:30 – 10:20AM Barnum 008. Call #00276.
Biology 009 Physiology
(Cross listed as Occupational Therapy 101). Call Boston School of Occupational
Therapy (627-5720) for information about this course.
Biology 13L Cells and Organisms with Lab.
An introductory course primarily for prospective biology majors. This course must
be taken with the lab -- enroll in one of the laboratories in Biology 13L
A-M below. General biological principles and widely used methods related to current
advances in biochemistry, cell and molecular biology, genetics, development and
biomedical sciences. Three lectures per week. Four exams + final. Dr. McLaughlin
and members of the department. Block D: Monday 9:30-10:20AM, Tuesday + Thursday
10:30-11:20AM. Cohen Auditorium. Call #00278.
Required Textbook.
Download syllabus
Biology 13L Laboratory A - N.
Members of the department. This is the laboratory component to Bio. 13L, which
meets once every week. Laboratory exercises are designed to reinforce lecture
material as well as to present new topics. A good initial exposure to ways of
thinking about and working with living organisms. Homework assignments will
emphasize scientific writing and data presentation. NOTE: Turnitin.com
will be used to monitor originality of assignments.
| Barnum 200: |
Barnum 216: |
| Lab A |
M 1:30-4:30 |
Call#00279 |
Lab B |
M 1:30-4:40 |
Call#00280 |
| Lab C |
T 1:30-4:30 |
Call#00281 |
Lab D |
T 1:30-4:30 |
Call#00282 |
| Lab E |
W 1:30-4:30 |
Call#00283 |
Lab F |
W 1:30-4:30 |
Call#00284 |
| Lab G |
Th 1:30-4:30 |
Call#00285 |
Lab H |
Th 1:30-4:30 |
Call#00286 |
| Lab I |
M 6:00-9:00 |
Call#00287 |
Lab J |
T 6:00-9:00 |
Call#00288 |
| Lab K |
T 6:00-9:00 |
Call#00289 |
Lab L |
W 6:00-9:00 |
Call#00290 |
| Lab M |
W 6:00-9:00 |
Call#00291 |
Lab N |
W 6:00-9:00 |
Call#00292 |
Optional Recitation: Block Arr: M 4:40-5:30PM, Barnum 008. Call #00293
Biology 41 General Genetics.
Concepts of classical and molecular genetics. A knowledge of basic genetics and
cell structure as covered in Bio 13 is essential for Bio 41 students. Grading is
based on two tests and an exam. The exam will be at the assigned final exam time.
Prerequisites: Bio 13. Dr. Gaudette Block – H+TTh: Tuesday &
Thursday 1:30-2:45 Barnum 008. Call #00296. Optional Recitation: Block K: Wed
4:30-5:20pm. Barnum 008. Call # 00295.
Download
syllabus
Biology 49-A Experiments in Physiology.
Investigation of several laboratory problems
drawn from various areas of physiology at cellular, tissue and organismal
levels. Prerequisite is Biology 14 & sophomore standing or equivalent.
Dr. Trimmer Block ARR: Lab - Monday 1:30-4:30PM, Barnum 001 Call#00297;
Recitation: Block L: Thurs. 4:30-5:25PM, Barnum 114. Call #00299.
Biology 49-B Experiments in Physiology.
Investigation of several laboratory problems drawn from various areas of
physiology at cellular, tissue and organismal levels. Prerequisite is Biology
14 & sophomore standing or equivalent. Dr. Trimmer Block ARR:
Lab - Tuesday 1:30-4:30PM, Barnum 001 Call #00298; Recitation: Block L: Thurs.
4:30-5:25PM, Barnum 114. Call #00299.
Biology 51A Experiments in Ecology.
Introduction to ecological research. Emphasis on acquiring skills in taxonomic
identification, sampling techniques, hypothesis testing and experimental design,
data analysis and interpretation, oral and written communication. Opportunity for
student-designed group research projects on ecological questions. One laboratory
session per week plus one discussion period. Prerequisites: Biology 14
or equivalent & sophomore standing. Dr. Pechenik. Block ARR:
Lab - Wednesday 1:30 – 5:00PM. Barnum 208 Call #00300; Recitation -Tuesday 4:30-5:20PM
Barnum 114. Call #00302.
Download syllabus
Biology 51B Experiments in Ecology.
Introduction to ecological research. Emphasis on acquiring skills in taxonomic
identification, sampling techniques, hypothesis testing and experimental design,
data analysis and interpretation, oral and written communication. Opportunity for
student-designed group research projects on ecological questions. One laboratory
session per week plus one discussion period. Prerequisites: Biology 14
or equivalent & sophomore standing. Dr. Pechenik Block ARR:
Lab - Thursday 1:30 – 5:00PM. Barnum 208 Call #00301. Recitation - Tuesday 4:30-5:20PM
Barnum 114. Call #00302. Download
syllabus
Biology 75 Comparative Physiology.
A comparative study of vertebrate function. Physiology of selected systems,
including circulation, excretion, respiration, temperature regulation and
metabolism. Emphasis on physiological adaptions to the environment. Three lectures.
Prerequisites: Biology 13/14 or equivalent. (Group B) Dr. Bernheim
Block G+: Monday & Wednesday, 1:30-2:45. Barnum 104. Call#03618
Download syllabus
Biology 93 Introduction to Research.
At least 10 hours per week of guided laboratory research, generally including
one hour of consultation or seminar with the research sponsor, and a research paper.
Details of the individual project to be arranged with the research sponsor.
Provides students with an opportunity to participate in biological research
- usually at the Tufts campus in Medford or Boston, but sometimes at other
institutions by special arrangement. Cannot be counted as one of
the eight graded courses required for a biology major. Pass/Fail grading. In
order to register for this course you must see the director of undergraduate
research in the Biology Department, Dr. Koegel. Refer to "Blackboard"
site for additional information and forms for this course. Prerequisites:
Three biology courses and prior consent of course coordinator. Call #00303.
Biology 103 Developmental Biology.
Concepts of animal developmental biology, with emphasis on the molecular events
underlying the morphological changes that occur going from egg to adult. Examples
drawn from several of phyla will illustrate developmental mechanisms, patterns
of gene expression and gene regulatory networks involved in gametogenesis,
fertilization, cell differentiation, cell signaling, cell-cell interactions and
organ formation. Topics include issues of human cloning, birth defects, stem cell
research, gene therapy, assisted reproduction technologies and evolution of
development. Prerequisite: Biology 41 or 46 or consent. (Group A)
Dr. Ernst Block - C: T-W-F 9:30-10:20. Barnum 114. Call #00305. Download syllabus
Biology 104 Immunology.
Concepts of modern immunology and their importance in biology. Topics
include humoral and cellular immune responses, antibody structure and
biosynthesis, antigen-antibody interactions, cellular immunology, immunological
tolerance, and tumor immunology. Prerequisite: Biology 41 or
equivalent. (Group A) Dr. Bernheim Block – J+: Tues. & Thurs
3:00-4:15. Barnum 104. Call #00306. Download syllabus
Biology 110 Endocrinology.
A comprehensive introduction to the chemical and physiological principles of
hormonal integration in vertebrates. Topics include: endocrine regulation of
metabolism, growth and development, reproduction, neural functions, mineral
and water balance, behavior and nutrition. Prerequisites: Biology 13
and 14 or equivalent. (Group B) NOTE: This is a High Demand course.
Dr. Romero Block E+: Mon. & Wed. 10:30-11:45. Barnum 104. Call #00307.
Download syllabus
Biology 132 Biostatistics.
Learning how to describe and interpret experimental results and observations
is a critical skill in many disciplines. In this course, students will learn
statistical methods for summarizing and analyzing biological data.
Topics include descriptive statistics, experimental design, probability,
parameter estimation, inference, correlation, regression, analysis of variance,
and nonparametric methods. Prerequisites: Biology 13 and 14 and one
additional Biology course above Bio 14. Dr. Lewis Block – D+:
Tues. & Th 10:30-11:45. Barnum 104. Call # 00309.
Download syllabus
Biology 142 Population & Community Ecology
(Cross-listed as Environmental Studies 142.) Introduction to population dynamics
(population structure and growth), species interactions (predator-prey, competition,
mutualism), and community structure, adaptations to the physical environment,
patterns and processes governing the world's biomes. Prerequisites: Biology
13 and 14 or equivalent, or permission of instructor (Group C). Dr. Chew
Block E+: Mon. & Wed., 10:30-11:45, Barnum 114 Call#00310.
Download
syllabus
Biology 171 Biochemistry I
(Cross-listed as Chemistry 171) First course in a two-course sequence. Chemistry
of biological molecules: proteins, lipids, carbohydrates, nucleic acids, etc.
Mechanisms of enzyme and ribozyme catalysis. Metabolic pathways, integrated
metabolic systems, and molecular physiology. Prerequisites: Bio 13, Chem 52.
(Group A) Dr. Kritzer Block B+: Tues. & Thurs., 8:05 – 9:20 Pearson 106.
Call #00312.
Biology 181 Tropical Ecology/Conservation.
(Cross-listed as ENV 181) This seminar and field trip is designed to provide students
with an in depth understanding of tropical ecology and first-hand experience in
tropical Central America. Topics to be covered include 1) community ecology, 2)
ecosystem ecology, 3) physiological ecology, 4) plant-animal interactions, 5)
conservation biology, and 6) reforestation. In addition to weekly readings,
discussions, and writing assignments, students will write a grant proposal and
present it to the class. Over winter break we will travel to Cost Rica for an
intensive two-week field experience. We will gain hands-on research experience in
contrasting habitats and learn about conservation efforts in Costa Rica. A typical
2-day schedule will be a morning hike followed by meetings to design group experiments,
data collection in the afternoon, an evening lecture or discussion, further data
collection the next morning, data analysis in the afternoon, and oral presentations
that evening. Although the conditions will often be uncomfortable (very hot and humid),
this is an excellent opportunity to witness the stunning beauty and diversity of
Costa Rica. Estimated cost of this trip is $1,600 (financial aid is available).
This is a HIGH DEMAND course. An application must be submitted to Dr. Orians
by 4/15. Applications are available in the Bio Department office, Dana 120.
Prerequisite: Biology 14 and consent. (Group C) Dr. Orians Block G+:
Mon & Wed., 1:30 – 2:45pm. Mondays: Barnum 113; Wednesdays: Barnum 114. Call#03619.
Download syllabus
Biology 183 Seminar in Darwinian Medicine.
In this seminar we will explore the evolutionary causes of diseases and critically
evaluate modern medical practices. The subject matter will be a springboard to
sharpening research skills, and to furthering our understanding and application of
Darwinian thought. Students will generate and test evolutionary hypotheses, and present
these results both orally and in manuscript form. Prerequisite: Bio 130 or
permission of instructor. (Group C) Dr. Starks Block 5: Monday 1:30-4:00PM,
Barnum 114. Call#00314. Download syllabus
Biology 188 Seminar in Molecular Biology & Genetics.
Current topics in molecular biology, genetics and genomics, studied through readings
from the original literature. Focus will be on studies recognized by the Nobel Prize
Committee as pivotal to modern molecular biology and genetics. These studies and current
research directions that follow from them will be covered using a combination of lectures,
class discussion, and presentations. Selected topics of current interest to be covered
include genome structure and polymorphisms as related to human disease, RNA functioning
in the regulation of gene expression, and cell cycle regulation and cancer. (Group A)
Prerequisites: Biology 41 and junior standing or permission of instructor.
Dr. Freudenreich Block F+: Tues & Thurs 12 – 1:15, Barnum 113. Call #00315.
Biology 193 Independent Research.
The department feels that the 8 biology courses required for the major should be well
distributed in the field of biology. Therefore, normally one course in Biology 193, 194
will be accepted as one of these 8. The student may take courses in Biology 193, 194
beyond these limitations and count them for credit toward graduation but not
toward the biology major. One course under 193, 194 can be used to fulfill the biology
department requirement for laboratory courses. At the semester's end the student
must deliver to his/her sponsor and members of the 193/194 review committee (4
faculty members) copies of a paper concerning his or her semester's work.
This should follow the format of a scientific paper. During the reading period
following the last class of the semester, the student will meet with this same review
group to present and discuss his/her work, and they will jointly award the grade for the
course. The presentation should be a 10-15 minute review of the work already described
in the written summary followed by questions, discussion of details, etc., lasting
another 5-10 minutes. The exact time for each session will be posted prior to the end
of classes. The oral presentation will be open to all interested faculty and students.
Normally 15 hours per week in the laboratory equals one course credit. The grade
is based upon the intellectual quality of the work. In order to register for this
course you must see the director of undergraduate research in the Biology department,
Dr. Koegel. See Blackboard for additional information and required forms. Prerequisite:
Bio 93 or comparable experience. Bio 93 and consent of Coordinator, Dr. Koegel - Call # 00316.
Biology 199 Senior Honors Thesis.
Two semesters of research. Prior consent must be obtained from the course coordinator
(Dr. Koegel) at the end of the junior year. In order to register for this course you
must see the director of undergraduate research in the Biology department. Dr. Koegel
In addition, you must register with Sara Nakaggwa in Dowling Hall by the middle of September.
These two steps are essential. Without completing them, you are not registered. See Blackboard
for additional information and required forms. Prerequisite: Bio 193 or 194 and consent.
See catalog for other prerequisites. Call #00318
Biology 243-01 Topics in Molecular/Cellular Biology.
Topics will be drawn from several of the following areas: regulation of gene expression,
chromatin structure and epigenetic regulation, mechanisms of chromosome segregation, DNA
replication, recombination and repair, genome structure and genome stability, intra- and
inter-cellular signaling pathways. Students will read and present papers from the current
literature. Novel experimental techniques used to answer central questions will be emphasized.
(Group A) Prerequisite: Biology 105 or equivalent OR permission of the
instructor. Drs. Freudenreich, Ernst & Levin Block 7+: Wednesday 1:30-4:30PM. Barnum
113. Call #00319.
Biology 253-01 Graduate Student Research Rotation.
A research rotation is an opportunity to explore a new area of Biology, to learn new
techniques, and to become acquainted with some of the research ongoing in our department
as students conduct intensive laboratory or field investigation, including independent
design of experiments ending with a final oral report. Students will normally present
their findings the Friday before the start of spring semester. Rotation Duration: Oral
reports will be given to a group consisting of other students who have just finished a
rotation, the sponsoring research mentors, members' of the students' committees,
graduate students, and other interested persons. Dr. McLaughlin 1 graded credit.
Prerequisite: consent. Call #00320.
Biology 260-01 Teaching Biology: Pedagogy and Practice.
This course aims to enhance the professional development of graduate students by preparing
them to teach biological sciences in academic venues that range from community colleges to
Research I universities. Graduate student participants will be introduced to issues related
to teaching in both lab and lecture settings and will apply effective teaching
techniques in their own classrooms. Program participants will learn about pedagogy, gain
practical teaching experience, and receive mentoring and formal evaluation of their teaching.
The course requirements are designed to be flexible enough to be pursued alongside full-time
disciplinary studies, yet ensure that participants are rigorously trained in biology-specific
pedagogy. Drs. McLaughlin and McVey. Block ARR: Friday 10:30-11:45AM. Barnum 113.
Call #00321. 1 graded credit. Prerequisite: consent/BIO13L Teaching Assistants.
Must also register for Bio 260-02.
Download syllabus
Biology 260-02 Teaching Biology: Pedagogy and Practice.
Dr. Gaudette. Block 13+: Thursday 6:00-9:00PM. Barnum 200. Call #00322.
Biology 291-01 Graduate Seminar.
Dr. Freudenreich. Block ARR: Thursday 8:30-10:20. Barnum 114. Call #00323.
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